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I work for an online university and I think your concerns at valid and should be brought to the attention of the school. Send in your concerns to your advisor, your faculty member or better yet to the dean or a person in leadership. I am not sure exactly what systems you are referring to but I would google the systems and make sure you are learning those that will be in demand for th role you want to take in your career. If not, you might need to do some additional brushing up. Most systems have training online or books you could borrow from a library...this extra work will pay off once it comes to interview time.